Variant report

Variant	rs289638
Chromosome Location	chr10:37923731-37923732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1022698	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10827804	0.86[AFR][1000 genomes]
rs11011343	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11011351	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1208681	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208684	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1208689	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1208708	0.84[ASN][1000 genomes]
rs1208767	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12774732	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1779017	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1814077	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs200903	0.90[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs200910	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2208317	0.81[AFR][1000 genomes]
rs289648	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs289649	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4934906	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4934907	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4934912	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482049	0.95[ASN][1000 genomes]
rs7081464	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7912428	0.89[AFR][1000 genomes]
rs9417256	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9787493	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv971846	chr10:37892555-37937603	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs289638	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL
rs289638	ZNF37A	cis	parietal	SCAN
rs289638	ZNF25	cis	cerebellum	SCAN
rs289638	ZNF37A///ZNF37B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37923000-37924400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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