The 2.0 version of rSNPBase

Variant report

Variant rs12088912
Chromosome Location chr1:94142433-94142434
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94127400-94143800 Genic enhancers HMEC breast
2 chr1:94127400-94144000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:94129200-94144800 Weak transcription GM12878-XiMat blood
4 chr1:94131200-94144000 Genic enhancers Placenta Placenta
5 chr1:94131600-94143800 Genic enhancers NHEK skin
6 chr1:94132800-94142600 Enhancers Adipose Nuclei Adipose
7 chr1:94132800-94144600 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr1:94135400-94142800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:94136000-94144200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:94136000-94144800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:94136400-94143000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:94137000-94142600 Enhancers Fetal Lung lung
13 chr1:94138200-94145000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:94138400-94142600 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:94138400-94144400 Genic enhancers NHLF lung
16 chr1:94138600-94145200 Weak transcription Gastric stomach
17 chr1:94138600-94145800 Weak transcription Colonic Mucosa Colon
18 chr1:94138600-94145800 Weak transcription Fetal Stomach stomach
19 chr1:94139000-94145200 Weak transcription Brain Cingulate Gyrus brain
20 chr1:94139200-94144800 Weak transcription Primary B cells from peripheral blood blood
21 chr1:94139200-94145200 Weak transcription Rectal Smooth Muscle rectum
22 chr1:94139200-94146000 Weak transcription Liver Liver
23 chr1:94139400-94144200 Weak transcription Fetal Kidney kidney
24 chr1:94139600-94142800 Enhancers Lung lung
25 chr1:94139600-94143400 Enhancers Fetal Muscle Leg muscle
26 chr1:94139600-94145600 Weak transcription Stomach Mucosa stomach
27 chr1:94139800-94142800 Weak transcription iPS-20b Cell Line embryonic stem cell
28 chr1:94139800-94143400 Enhancers Left Ventricle heart
29 chr1:94140000-94142600 Enhancers Fetal Muscle Trunk muscle
30 chr1:94140000-94142800 Enhancers Colon Smooth Muscle Colon
31 chr1:94140000-94143400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:94140200-94146200 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:94140400-94142600 Enhancers HepG2 liver
34 chr1:94140400-94143200 Enhancers Skeletal Muscle Female skeletal muscle
35 chr1:94140400-94145800 Weak transcription Esophagus oesophagus
36 chr1:94140600-94142800 Enhancers HUVEC blood vessel
37 chr1:94140600-94143200 Enhancers Brain Hippocampus Middle brain
38 chr1:94140600-94144800 Enhancers NHDF-Ad bronchial
39 chr1:94140800-94143200 Enhancers Right Ventricle heart
40 chr1:94140800-94143400 Enhancers Right Atrium heart
41 chr1:94140800-94144400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:94141000-94142600 Enhancers Skeletal Muscle Male skeletal muscle
43 chr1:94141000-94143000 Enhancers Spleen Spleen
44 chr1:94141000-94144200 Genic enhancers Breast Myoepithelial Primary Cells Breast
45 chr1:94141000-94144400 Transcr. at gene 5' and 3' HSMM muscle
46 chr1:94141000-94146200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:94141200-94142600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:94141200-94144000 Weak transcription Fetal Intestine Small intestine
49 chr1:94141200-94144600 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr1:94141200-94144800 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015