Variant report

Variant	rs72961375
Chromosome Location	chr1:93943800-93943801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11164952	1.00[AMR][1000 genomes]
rs11164960	1.00[AMR][1000 genomes]
rs12082128	1.00[AMR][1000 genomes]
rs12088912	1.00[AMR][1000 genomes]
rs12090909	1.00[AMR][1000 genomes]
rs12096357	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:93922600-93944000	Weak transcription	Gastric	stomach
3	chr1:93927600-93943800	Weak transcription	Pancreas	Pancrea
4	chr1:93929000-93946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:93933400-93943800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:93934200-93943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:93937600-93943800	Weak transcription	HepG2	liver
8	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:93939600-93946000	Weak transcription	Left Ventricle	heart
10	chr1:93940400-93943800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:93941200-93947400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:93943000-93943800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:93943200-93943800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
15	chr1:93943400-93944200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr1:93943600-93944000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr1:93943600-93944200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:93943600-93944200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr1:93943600-93944200	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr1:93943600-93944400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:93943600-93944600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
22	chr1:93943600-93946800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:93943800-93944000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
24	chr1:93943800-93944000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:93943800-93944200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:93943800-93944200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:93943800-93944200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:93943800-93944200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:93943800-93944200	ZNF genes & repeats	Aorta	Aorta
30	chr1:93943800-93944200	ZNF genes & repeats	Pancreas	Pancrea
31	chr1:93943800-93944800	ZNF genes & repeats	HepG2	liver
32	chr1:93943800-93945400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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