Variant report

Variant	rs12089154
Chromosome Location	chr1:158906637-158906638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12059838	1.00[AMR][1000 genomes]
rs12061139	1.00[AMR][1000 genomes]
rs12062789	1.00[AMR][1000 genomes]
rs12090737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv872484	chr1:158863845-158909164	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv872485	chr1:158863845-158922287	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv946443	chr1:158905154-158911493	Enhancers Weak transcription Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158902200-158907800	Weak transcription	Thymus	Thymus
2	chr1:158902200-158920000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:158904200-158912000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:158904400-158906800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:158904800-158906800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:158904800-158906800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:158905400-158907000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:158905600-158906800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:158905600-158908800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:158905600-158921800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr1:158905600-158922000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:158905800-158906800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:158905800-158930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:158906200-158908000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:158906600-158907000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:158906600-158907200	Strong transcription	Primary B cells from cord blood	blood
17	chr1:158906600-158907800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:158906600-158909600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:158906600-158919600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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