Variant report

Variant	rs12059838
Chromosome Location	chr1:158930492-158930493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10489847	1.00[EUR][1000 genomes]
rs1101999	1.00[EUR][1000 genomes]
rs1102000	1.00[EUR][1000 genomes]
rs1102017	1.00[EUR][1000 genomes]
rs1104171	1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12061139	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12062789	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12089154	1.00[AMR][1000 genomes]
rs12090737	1.00[AMR][1000 genomes]
rs1341409	1.00[EUR][1000 genomes]
rs1612810	1.00[EUR][1000 genomes]
rs1612844	1.00[EUR][1000 genomes]
rs1616270	1.00[EUR][1000 genomes]
rs1626284	1.00[EUR][1000 genomes]
rs1629682	1.00[EUR][1000 genomes]
rs1629702	1.00[EUR][1000 genomes]
rs1631448	1.00[EUR][1000 genomes]
rs1633293	1.00[EUR][1000 genomes]
rs1633296	1.00[EUR][1000 genomes]
rs1633298	1.00[EUR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs1772398	1.00[EUR][1000 genomes]
rs1772439	1.00[EUR][1000 genomes]
rs1772441	1.00[EUR][1000 genomes]
rs1772442	1.00[EUR][1000 genomes]
rs1772444	1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs856059	1.00[EUR][1000 genomes]
rs856060	1.00[EUR][1000 genomes]
rs856061	1.00[EUR][1000 genomes]
rs856062	1.00[EUR][1000 genomes]
rs856063	1.00[EUR][1000 genomes]
rs856065	1.00[EUR][1000 genomes]
rs856069	1.00[EUR][1000 genomes]
rs856075	1.00[EUR][1000 genomes]
rs856076	1.00[EUR][1000 genomes]
rs856078	1.00[EUR][1000 genomes]
rs856079	1.00[AMR][1000 genomes]
rs856082	1.00[EUR][1000 genomes]
rs856087	1.00[EUR][1000 genomes]
rs856128	1.00[EUR][1000 genomes]
rs856130	1.00[EUR][1000 genomes]
rs856137	1.00[EUR][1000 genomes]
rs856138	1.00[EUR][1000 genomes]
rs856139	1.00[EUR][1000 genomes]
rs856144	1.00[EUR][1000 genomes]
rs856145	1.00[EUR][1000 genomes]
rs856147	1.00[EUR][1000 genomes]
rs856148	1.00[EUR][1000 genomes]
rs864439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158920600-158950600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158922400-158931000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:158922800-158931000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:158922800-158931200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:158922800-158931400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:158923000-158930600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:158923000-158932400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:158923000-158949600	Weak transcription	Primary B cells from cord blood	blood
9	chr1:158928800-158931200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:158928800-158932400	Strong transcription	Primary T cells from cord blood	blood
11	chr1:158929000-158931200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:158929200-158932800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:158930000-158930600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:158930000-158931200	Weak transcription	Spleen	Spleen
15	chr1:158930000-158932400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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