Variant report

Variant	rs856076
Chromosome Location	chr1:158967046-158967047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158640177..158642154-chr1:158966970..158969167,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10489847	1.00[EUR][1000 genomes]
rs1101999	1.00[EUR][1000 genomes]
rs1102000	1.00[EUR][1000 genomes]
rs1102017	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1104171	1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12059838	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12061139	1.00[EUR][1000 genomes]
rs12062789	1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12064129	1.00[EUR][1000 genomes]
rs12068030	1.00[EUR][1000 genomes]
rs1341409	1.00[EUR][1000 genomes]
rs1612810	1.00[EUR][1000 genomes]
rs1612844	1.00[EUR][1000 genomes]
rs1616270	1.00[EUR][1000 genomes]
rs1626284	0.93[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1629682	1.00[EUR][1000 genomes]
rs1629702	1.00[EUR][1000 genomes]
rs1631448	1.00[EUR][1000 genomes]
rs1633293	1.00[EUR][1000 genomes]
rs1633296	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1633298	0.93[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs16841789	1.00[EUR][1000 genomes]
rs1772398	1.00[EUR][1000 genomes]
rs1772439	1.00[EUR][1000 genomes]
rs1772441	1.00[EUR][1000 genomes]
rs1772442	1.00[EUR][1000 genomes]
rs1772444	1.00[EUR][1000 genomes]
rs2746042	1.00[EUR][1000 genomes]
rs2814755	1.00[TSI][hapmap]
rs2852717	1.00[TSI][hapmap]
rs2852719	1.00[TSI][hapmap]
rs3026944	1.00[EUR][1000 genomes]
rs3026947	1.00[EUR][1000 genomes]
rs3026970	1.00[EUR][1000 genomes]
rs3026984	1.00[EUR][1000 genomes]
rs34870435	1.00[EUR][1000 genomes]
rs35122728	1.00[EUR][1000 genomes]
rs36103299	1.00[EUR][1000 genomes]
rs36160848	1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs856059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856060	1.00[EUR][1000 genomes]
rs856061	1.00[EUR][1000 genomes]
rs856062	1.00[EUR][1000 genomes]
rs856063	1.00[EUR][1000 genomes]
rs856065	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs856069	0.84[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs856075	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856078	0.84[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856082	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs856087	1.00[EUR][1000 genomes]
rs856128	1.00[EUR][1000 genomes]
rs856130	1.00[EUR][1000 genomes]
rs856137	1.00[EUR][1000 genomes]
rs856138	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs856139	1.00[EUR][1000 genomes]
rs856144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs856145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs864439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv3176	chr1:158955373-158986568	Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1838509	chr1:158960112-158967046	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3512866	chr1:158960178-158967276	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3512865	chr1:158960603-158967201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv436565	chr1:158961137-158967290	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1793882	chr1:158961777-158972490	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv548042	chr1:158963127-158967046	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv548043	chr1:158963127-158972490	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158954400-158968400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:158955000-158968200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:158960800-158975400	Weak transcription	Spleen	Spleen
4	chr1:158961000-158968200	Weak transcription	Primary B cells from cord blood	blood
5	chr1:158963000-158968200	Weak transcription	Primary T cells from cord blood	blood
6	chr1:158965000-158968200	Weak transcription	Fetal Kidney	kidney
7	chr1:158965400-158968800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:158965600-158968000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:158965600-158969000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:158965600-158969000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:158965800-158968200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:158965800-158968600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:158966000-158967200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:158966200-158967400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:158966200-158968000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr1:158966400-158968000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:158966600-158968600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr1:158966800-158967400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:158966800-158968200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:158966800-158968400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr1:158967000-158967600	Enhancers	Brain Substantia Nigra	brain
22	chr1:158967000-158968000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr1:158967000-158968200	Weak transcription	Brain Anterior Caudate	brain
24	chr1:158967000-158968200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:158967000-158968400	Enhancers	GM12878-XiMat	blood

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