Variant report

Variant	rs2852717
Chromosome Location	chr1:159162922-159162923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159162126..159163793-chr1:159168944..159171497,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11265167	1.00[TSI][hapmap]
rs2746042	0.90[AMR][1000 genomes]
rs2746043	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2746044	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2746045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814755	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814767	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2852718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2852719	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027041	1.00[TSI][hapmap]
rs3027046	1.00[TSI][hapmap]
rs3893415	1.00[TSI][hapmap]
rs6656586	1.00[TSI][hapmap]
rs6665683	1.00[MEX][hapmap]
rs856065	1.00[TSI][hapmap]
rs856069	1.00[TSI][hapmap]
rs856075	1.00[TSI][hapmap]
rs856076	1.00[TSI][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159157800-159167600	Weak transcription	Spleen	Spleen
2	chr1:159158400-159174000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:159158800-159171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:159158800-159177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:159158800-159177800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:159159000-159165800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:159159000-159168000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:159159400-159169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:159159600-159163600	Strong transcription	Brain Germinal Matrix	brain
11	chr1:159159600-159173200	Strong transcription	Fetal Brain Female	brain
12	chr1:159160800-159165200	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:159161000-159165200	Weak transcription	Brain Substantia Nigra	brain
14	chr1:159161000-159167600	Weak transcription	Placenta	Placenta
15	chr1:159161400-159163000	Strong transcription	Fetal Brain Male	brain
16	chr1:159161600-159163800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:159161600-159164800	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr1:159161600-159167600	Strong transcription	Brain Anterior Caudate	brain
19	chr1:159161800-159163800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:159161800-159163800	Strong transcription	Fetal Stomach	stomach
21	chr1:159161800-159164000	Strong transcription	Brain Angular Gyrus	brain
22	chr1:159161800-159170000	Weak transcription	Muscle Satellite Cultured Cells	--

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