Variant report

Variant	rs2746045
Chromosome Location	chr1:159168031-159168032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:159130393..159131479-chr1:159167464..159168322,13	MCF-7	breast:
2	chr1:12191172..12191672-chr1:159167518..159168039,2	MCF-7	breast:
3	chr1:159167007..159168193-chr1:159181056..159182026,4	MCF-7	breast:
4	chr1:159167646..159168409-chr1:159861108..159861654,3	MCF-7	breast:
5	chr1:159102004..159102751-chr1:159167774..159168846,3	MCF-7	breast:
6	chr1:159167483..159168417-chr1:159750434..159751116,2	K562	blood:
7	chr1:159130438..159131433-chr1:159167360..159168443,11	K562	blood:

Variant related genes	Relation type
ENSG00000158716	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2746042	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2746043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2746044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814763	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2814767	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2852717	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2852718	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2852719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158400-159174000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:159158800-159171200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:159158800-159177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159158800-159177800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:159159400-159169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:159159600-159173200	Strong transcription	Fetal Brain Female	brain
8	chr1:159161800-159170000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:159163000-159173800	Weak transcription	Fetal Brain Male	brain
10	chr1:159163800-159169400	Weak transcription	Fetal Stomach	stomach
11	chr1:159164200-159172600	Strong transcription	Brain Germinal Matrix	brain
12	chr1:159166400-159168400	Enhancers	Fetal Thymus	thymus
13	chr1:159167200-159168600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:159167400-159168200	Enhancers	Thymus	Thymus
15	chr1:159167400-159168800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:159167600-159168200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:159167600-159168200	Genic enhancers	Brain Anterior Caudate	brain
18	chr1:159167600-159168400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:159167600-159168400	Enhancers	Brain Angular Gyrus	brain
20	chr1:159167600-159168400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:159167600-159168400	Enhancers	Brain Substantia Nigra	brain
22	chr1:159167600-159168600	Enhancers	Brain Hippocampus Middle	brain
23	chr1:159167600-159168600	Enhancers	Placenta	Placenta
24	chr1:159167600-159168800	Enhancers	Spleen	Spleen
25	chr1:159167600-159170000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:159167800-159168200	Flanking Active TSS	K562	blood
27	chr1:159167800-159168400	Enhancers	Brain Cingulate Gyrus	brain
28	chr1:159167800-159168400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:159167800-159169200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:159167800-159171200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:159168000-159168200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr1:159168000-159168400	Enhancers	Stomach Mucosa	stomach
33	chr1:159168000-159174000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:159168000-159177600	Weak transcription	H1 Cell Line	embryonic stem cell

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