Variant report

Variant	rs3027046
Chromosome Location	chr1:159182196-159182197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:159182157-159182257	GM20000	blood:	n/a	n/a
2	CTCF	chr1:159182080-159182230	AG04449	skin:	n/a	n/a
3	CTCF	chr1:159182080-159182230	AG10803	skin:	n/a	n/a
4	CTCF	chr1:159182080-159182230	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:159174604..159177754-chr1:159180035..159182676,3	K562	blood:
2	chr1:159130498..159131890-chr1:159181009..159182449,9	MCF-7	breast:
3	chr1:159101858..159102727-chr1:159181553..159182280,2	MCF-7	breast:
4	chr1:159129546..159131713-chr1:159182097..159184568,2	K562	blood:
5	chr1:159130523..159131496-chr1:159179878..159182456,22	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225670	TF binding region
ENSG00000213088	Chromatin interaction

rs_ID	r²[population]
rs10047107	1.00[EUR][1000 genomes]
rs10437336	1.00[EUR][1000 genomes]
rs10437337	1.00[EUR][1000 genomes]
rs10489847	1.00[EUR][1000 genomes]
rs10489850	1.00[EUR][1000 genomes]
rs10489851	1.00[EUR][1000 genomes]
rs10489852	1.00[EUR][1000 genomes]
rs10489853	1.00[EUR][1000 genomes]
rs11265145	1.00[EUR][1000 genomes]
rs11265147	1.00[EUR][1000 genomes]
rs11265148	1.00[EUR][1000 genomes]
rs11265151	1.00[EUR][1000 genomes]
rs11265153	1.00[EUR][1000 genomes]
rs11265167	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12062367	1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12064129	1.00[EUR][1000 genomes]
rs12064962	1.00[EUR][1000 genomes]
rs12067678	1.00[EUR][1000 genomes]
rs12068030	1.00[EUR][1000 genomes]
rs12068651	1.00[EUR][1000 genomes]
rs12074418	1.00[EUR][1000 genomes]
rs12074452	1.00[EUR][1000 genomes]
rs12074934	1.00[EUR][1000 genomes]
rs12078114	1.00[EUR][1000 genomes]
rs12078168	1.00[EUR][1000 genomes]
rs12079229	1.00[EUR][1000 genomes]
rs12079235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12082893	1.00[EUR][1000 genomes]
rs12085001	1.00[EUR][1000 genomes]
rs12085085	1.00[EUR][1000 genomes]
rs12085686	1.00[EUR][1000 genomes]
rs12086637	1.00[EUR][1000 genomes]
rs12086871	1.00[EUR][1000 genomes]
rs12087366	1.00[EUR][1000 genomes]
rs12095599	1.00[EUR][1000 genomes]
rs12096257	1.00[EUR][1000 genomes]
rs13374880	1.00[EUR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs16841789	1.00[EUR][1000 genomes]
rs16841937	1.00[EUR][1000 genomes]
rs16841970	1.00[EUR][1000 genomes]
rs16842041	1.00[EUR][1000 genomes]
rs2325923	1.00[EUR][1000 genomes]
rs2325925	1.00[EUR][1000 genomes]
rs2325927	1.00[EUR][1000 genomes]
rs2746042	1.00[EUR][1000 genomes]
rs2746043	1.00[TSI][hapmap]
rs2746044	1.00[TSI][hapmap]
rs2814755	1.00[TSI][hapmap]
rs2852717	1.00[TSI][hapmap]
rs2852719	1.00[TSI][hapmap]
rs28537540	1.00[EUR][1000 genomes]
rs3026944	1.00[EUR][1000 genomes]
rs3026947	1.00[EUR][1000 genomes]
rs3026970	1.00[EUR][1000 genomes]
rs3026984	1.00[EUR][1000 genomes]
rs3027040	1.00[EUR][1000 genomes]
rs3027041	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3027047	1.00[EUR][1000 genomes]
rs3027050	1.00[EUR][1000 genomes]
rs3027057	1.00[EUR][1000 genomes]
rs3027066	1.00[EUR][1000 genomes]
rs34152791	1.00[EUR][1000 genomes]
rs34870435	1.00[EUR][1000 genomes]
rs35122728	1.00[EUR][1000 genomes]
rs36103299	1.00[EUR][1000 genomes]
rs36160848	1.00[EUR][1000 genomes]
rs3893415	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4255380	1.00[EUR][1000 genomes]
rs4534374	1.00[EUR][1000 genomes]
rs4568831	1.00[EUR][1000 genomes]
rs56113018	1.00[EUR][1000 genomes]
rs59437380	1.00[EUR][1000 genomes]
rs6656586	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6670082	1.00[EUR][1000 genomes]
rs6670592	1.00[EUR][1000 genomes]
rs6670703	1.00[EUR][1000 genomes]
rs6673514	1.00[EUR][1000 genomes]
rs6695631	1.00[EUR][1000 genomes]
rs6696230	1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs73027932	1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs7515532	1.00[EUR][1000 genomes]
rs7552141	1.00[EUR][1000 genomes]
rs856059	1.00[EUR][1000 genomes]
rs856060	1.00[EUR][1000 genomes]
rs856061	1.00[EUR][1000 genomes]
rs856062	1.00[EUR][1000 genomes]
rs856063	1.00[EUR][1000 genomes]
rs856065	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs856069	1.00[EUR][1000 genomes]
rs856078	1.00[EUR][1000 genomes]
rs864439	1.00[EUR][1000 genomes]

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159182200	Weak transcription	Spleen	Spleen
3	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159181400-159182400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:159181400-159188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:159181600-159182200	Enhancers	HUVEC	blood vessel
7	chr1:159181600-159184600	Weak transcription	HSMMtube	muscle
8	chr1:159181800-159184600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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