Variant report

Variant	rs12085001
Chromosome Location	chr1:159234783-159234784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10047107	1.00[EUR][1000 genomes]
rs10437336	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10437337	1.00[EUR][1000 genomes]
rs10489847	1.00[EUR][1000 genomes]
rs10489850	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489851	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489852	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489853	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265145	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265153	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11265159	0.96[AFR][1000 genomes]
rs11265164	0.95[AFR][1000 genomes]
rs11265167	1.00[EUR][1000 genomes]
rs12057331	1.00[EUR][1000 genomes]
rs12060241	1.00[EUR][1000 genomes]
rs12062367	1.00[EUR][1000 genomes]
rs12063682	1.00[EUR][1000 genomes]
rs12063973	1.00[EUR][1000 genomes]
rs12064129	1.00[EUR][1000 genomes]
rs12064962	1.00[EUR][1000 genomes]
rs12067678	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068030	1.00[EUR][1000 genomes]
rs12068651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074934	1.00[EUR][1000 genomes]
rs12078114	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078168	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079229	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079235	1.00[EUR][1000 genomes]
rs12082893	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083313	0.96[AFR][1000 genomes]
rs12085085	1.00[EUR][1000 genomes]
rs12085686	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086637	1.00[EUR][1000 genomes]
rs12086871	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087366	1.00[EUR][1000 genomes]
rs12095599	1.00[EUR][1000 genomes]
rs12096257	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097396	0.96[AFR][1000 genomes]
rs13374880	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374886	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16841729	1.00[EUR][1000 genomes]
rs16841784	1.00[EUR][1000 genomes]
rs16841789	1.00[EUR][1000 genomes]
rs16841937	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841970	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842041	1.00[EUR][1000 genomes]
rs2325923	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2325925	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2325927	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2746042	1.00[EUR][1000 genomes]
rs28537540	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026944	1.00[EUR][1000 genomes]
rs3026947	1.00[EUR][1000 genomes]
rs3026970	1.00[EUR][1000 genomes]
rs3026984	1.00[EUR][1000 genomes]
rs3027040	1.00[EUR][1000 genomes]
rs3027041	1.00[EUR][1000 genomes]
rs3027046	1.00[EUR][1000 genomes]
rs3027047	1.00[EUR][1000 genomes]
rs3027050	1.00[EUR][1000 genomes]
rs3027057	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3027066	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34152791	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34870435	1.00[EUR][1000 genomes]
rs35122728	1.00[EUR][1000 genomes]
rs36103299	1.00[EUR][1000 genomes]
rs36160848	1.00[EUR][1000 genomes]
rs3893415	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4255380	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4534374	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4568831	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56113018	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56697178	0.96[AFR][1000 genomes]
rs59437380	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656586	1.00[EUR][1000 genomes]
rs6670082	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670592	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6670703	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673514	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695631	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6696230	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023773	1.00[EUR][1000 genomes]
rs73023775	1.00[EUR][1000 genomes]
rs73027932	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122265	1.00[EUR][1000 genomes]
rs7515532	1.00[EUR][1000 genomes]
rs7552141	1.00[EUR][1000 genomes]
rs7556244	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159232800-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159233200-159236000	Weak transcription	NHEK	skin
3	chr1:159233200-159236200	Weak transcription	HUVEC	blood vessel
4	chr1:159233400-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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