Variant report

Variant	rs11265164
Chromosome Location	chr1:159249745-159249746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10489848	0.90[ASN][1000 genomes]
rs10489850	0.98[AFR][1000 genomes]
rs10489851	0.98[AFR][1000 genomes]
rs10489852	0.98[AFR][1000 genomes]
rs10489853	0.98[AFR][1000 genomes]
rs10489854	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489855	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265146	0.90[ASN][1000 genomes]
rs11265159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12074418	0.97[AFR][1000 genomes]
rs12074452	0.91[AFR][1000 genomes]
rs12078114	0.98[AFR][1000 genomes]
rs12078168	0.98[AFR][1000 genomes]
rs12079229	0.98[AFR][1000 genomes]
rs12082893	0.98[AFR][1000 genomes]
rs12083313	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085001	0.95[AFR][1000 genomes]
rs12085686	0.98[AFR][1000 genomes]
rs12086871	0.98[AFR][1000 genomes]
rs12087219	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12096257	0.98[AFR][1000 genomes]
rs12097396	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121203	0.92[ASN][1000 genomes]
rs12561917	0.90[ASN][1000 genomes]
rs12564837	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12568101	0.90[ASN][1000 genomes]
rs13374880	0.97[AFR][1000 genomes]
rs13374886	0.94[AFR][1000 genomes]
rs16841957	0.98[EUR][1000 genomes]
rs16841967	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16841970	0.98[AFR][1000 genomes]
rs2325914	0.87[ASN][1000 genomes]
rs2325915	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2325923	0.98[AFR][1000 genomes]
rs2325925	0.98[AFR][1000 genomes]
rs2325927	0.98[AFR][1000 genomes]
rs28537540	0.98[AFR][1000 genomes]
rs2875781	0.85[ASN][1000 genomes]
rs3027055	0.84[ASN][1000 genomes]
rs3027056	0.84[ASN][1000 genomes]
rs3027061	0.84[ASN][1000 genomes]
rs3027063	0.84[ASN][1000 genomes]
rs3027074	0.90[ASN][1000 genomes]
rs3027075	0.90[ASN][1000 genomes]
rs3027077	0.90[ASN][1000 genomes]
rs34497749	0.90[ASN][1000 genomes]
rs34757892	0.90[ASN][1000 genomes]
rs35014997	0.90[ASN][1000 genomes]
rs35262301	0.90[ASN][1000 genomes]
rs35921532	0.84[ASN][1000 genomes]
rs3845624	0.91[ASN][1000 genomes]
rs3893415	0.96[AFR][1000 genomes]
rs4255380	0.95[AFR][1000 genomes]
rs4498802	0.90[ASN][1000 genomes]
rs4534374	0.97[AFR][1000 genomes]
rs4568831	0.98[AFR][1000 genomes]
rs56697178	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60069993	0.92[ASN][1000 genomes]
rs6670082	0.98[AFR][1000 genomes]
rs6670592	0.98[AFR][1000 genomes]
rs6670703	0.94[AFR][1000 genomes]
rs6673514	0.98[AFR][1000 genomes]
rs6695631	0.98[AFR][1000 genomes]
rs6696230	0.98[AFR][1000 genomes]
rs72633670	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73027932	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:159249000-159250000	Enhancers	Hela-S3	cervix
3	chr1:159249200-159250800	Flanking Active TSS	A549	lung
4	chr1:159249600-159249800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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