Variant report

Variant	rs3027061
Chromosome Location	chr1:159186600-159186601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489848	0.91[ASN][1000 genomes]
rs10489854	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10489855	0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs11265146	0.91[ASN][1000 genomes]
rs11265164	0.84[ASN][1000 genomes]
rs12034864	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12084987	0.81[EUR][1000 genomes]
rs12087219	0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs12121203	0.90[ASN][1000 genomes]
rs12561917	0.91[ASN][1000 genomes]
rs12564837	0.85[ASN][1000 genomes]
rs12568101	0.91[ASN][1000 genomes]
rs16841967	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2269718	0.84[JPT][hapmap]
rs2269719	0.85[JPT][hapmap]
rs2325914	0.87[ASN][1000 genomes]
rs2325915	0.87[ASN][1000 genomes]
rs2875781	0.85[ASN][1000 genomes]
rs3027044	0.96[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027045	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3027048	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3027051	0.87[AFR][1000 genomes]
rs3027052	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3027055	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027056	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027063	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027074	0.91[ASN][1000 genomes]
rs3027075	0.91[ASN][1000 genomes]
rs3027077	0.91[ASN][1000 genomes]
rs34023441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34497749	0.91[ASN][1000 genomes]
rs34757892	0.91[ASN][1000 genomes]
rs34982367	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35014997	0.91[ASN][1000 genomes]
rs35105792	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35262301	0.91[ASN][1000 genomes]
rs35921532	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845624	0.91[ASN][1000 genomes]
rs4083420	0.81[EUR][1000 genomes]
rs4498802	0.91[ASN][1000 genomes]
rs60069993	0.90[ASN][1000 genomes]
rs72633670	0.85[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:159181400-159188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:159185000-159190400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:159186400-159188400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links