Variant report

Variant	rs16841967
Chromosome Location	chr1:159249066-159249067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489848	0.90[ASN][1000 genomes]
rs10489854	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265146	0.90[ASN][1000 genomes]
rs11265159	0.91[EUR][1000 genomes]
rs11265164	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12083313	0.98[EUR][1000 genomes]
rs12087219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12097396	0.98[EUR][1000 genomes]
rs12121203	0.93[ASN][1000 genomes]
rs12561917	0.90[ASN][1000 genomes]
rs12562171	0.82[MEX][hapmap]
rs12564837	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568101	0.90[ASN][1000 genomes]
rs16841952	0.87[AFR][1000 genomes]
rs16841957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841975	0.92[AFR][1000 genomes]
rs2269719	0.80[JPT][hapmap]
rs2325914	0.88[ASN][1000 genomes]
rs2325915	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2875781	0.85[ASN][1000 genomes]
rs3027055	0.85[ASN][1000 genomes]
rs3027056	0.85[ASN][1000 genomes]
rs3027061	0.85[ASN][1000 genomes]
rs3027063	0.85[ASN][1000 genomes]
rs3027074	0.90[ASN][1000 genomes]
rs3027075	0.90[ASN][1000 genomes]
rs3027077	0.90[ASN][1000 genomes]
rs34497749	0.90[ASN][1000 genomes]
rs34757892	0.90[ASN][1000 genomes]
rs35014997	0.90[ASN][1000 genomes]
rs35262301	0.90[ASN][1000 genomes]
rs35921532	0.85[ASN][1000 genomes]
rs3845624	0.92[ASN][1000 genomes]
rs4128726	0.82[MEX][hapmap]
rs4498802	0.90[ASN][1000 genomes]
rs56697178	0.91[EUR][1000 genomes]
rs60069993	0.93[ASN][1000 genomes]
rs72633670	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:159247400-159249600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:159249000-159249200	Enhancers	A549	lung
4	chr1:159249000-159250000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links