Variant report

Variant	rs12562171
Chromosome Location	chr1:159286550-159286551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10489854	0.82[MEX][hapmap]
rs10489855	1.00[AFR][1000 genomes]
rs10489856	0.85[CEU][hapmap]
rs11265165	0.85[CEU][hapmap];0.87[CHD][hapmap]
rs12061273	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs12564019	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs12565926	0.85[CEU][hapmap]
rs12566875	1.00[CEU][hapmap]
rs16841957	1.00[AFR][1000 genomes]
rs16841967	0.82[MEX][hapmap]
rs16842010	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2269718	1.00[AFR][1000 genomes]
rs2269719	1.00[AFR][1000 genomes]
rs4128726	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs4579753	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55685457	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58037016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61601273	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72633670	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159284000-159286600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159286000-159286600	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links