Variant report
Variant | rs55685457 |
---|---|
Chromosome Location | chr1:159309671-159309672 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12562171 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12564019 | 1.00[AFR][1000 genomes] |
rs12565926 | 1.00[AFR][1000 genomes] |
rs12566875 | 1.00[AFR][1000 genomes] |
rs34940390 | 1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35089781 | 1.00[AFR][1000 genomes] |
rs4128726 | 1.00[AFR][1000 genomes] |
rs4579753 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4587563 | 1.00[AFR][1000 genomes] |
rs55638552 | 1.00[AFR][1000 genomes] |
rs55700503 | 1.00[AFR][1000 genomes] |
rs55893685 | 1.00[AFR][1000 genomes] |
rs55985148 | 1.00[AFR][1000 genomes] |
rs56178928 | 1.00[AFR][1000 genomes] |
rs56244009 | 1.00[AFR][1000 genomes] |
rs56283216 | 1.00[AFR][1000 genomes] |
rs56380934 | 1.00[AFR][1000 genomes] |
rs56381216 | 1.00[AFR][1000 genomes] |
rs57256834 | 1.00[AFR][1000 genomes] |
rs57914415 | 1.00[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs58037016 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs58463446 | 1.00[AFR][1000 genomes] |
rs60751305 | 1.00[AFR][1000 genomes] |
rs61601273 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv3451967 | chr1:159299928-159322549 | Enhancers Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:159309200-159310200 | Weak transcription | Fetal Intestine Small | intestine |
2 | chr1:159309600-159310200 | Enhancers | Fetal Intestine Large | intestine |