Variant report

Variant	rs55700503
Chromosome Location	chr1:159398468-159398469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12564019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12566875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13375812	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34940390	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35089781	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4128726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4584388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4587563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55638552	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55685457	1.00[AFR][1000 genomes]
rs55836400	0.88[EUR][1000 genomes]
rs55893685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55985148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56178928	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56244009	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56276965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56283216	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56376195	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56380934	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56381216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57256834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57914415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58463446	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60751305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60909440	0.82[EUR][1000 genomes]
rs6689142	0.82[EUR][1000 genomes]
rs73013349	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159397600-159398600	Weak transcription	Fetal Intestine Large	intestine
2	chr1:159397600-159398600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:159398400-159399800	Enhancers	HMEC	breast
4	chr1:159398400-159400200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:159398400-159400200	Enhancers	NH-A	brain
6	chr1:159398400-159400200	Enhancers	Osteobl	bone
7	chr1:159398400-159400400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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