Variant report
| Variant | rs34940390 |
|---|---|
| Chromosome Location | chr1:159331825-159331826 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ELF1 | chr1:159331450-159331842 | K562 | blood: | n/a | chr1:159331635-159331648 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR10J8P | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12564019 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs12565926 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs12566875 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs35089781 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs4128726 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs4579753 | 0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4587563 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs55638552 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs55685457 | 1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55700503 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55893685 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs55985148 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs56178928 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs56244009 | 1.00[AFR][1000 genomes] |
| rs56276965 | 0.81[ASN][1000 genomes] |
| rs56283216 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs56380934 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs56381216 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs57256834 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs57914415 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs58463446 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs60751305 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
