Variant report

Variant	rs4128726
Chromosome Location	chr1:159405844-159405845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:159405703-159406409	K562	blood:	n/a	n/a

Variant related genes	Relation type
OR10J1	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10489854	0.82[MEX][hapmap]
rs10489856	0.85[CEU][hapmap]
rs11265165	0.85[CEU][hapmap]
rs12061273	0.85[CEU][hapmap]
rs12562171	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs12564019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565926	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12566875	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13375812	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16841967	0.82[MEX][hapmap]
rs34940390	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35089781	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4339862	0.85[CHD][hapmap]
rs4579753	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs4584388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4587563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55638552	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55685457	1.00[AFR][1000 genomes]
rs55700503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55836400	0.88[EUR][1000 genomes]
rs55893685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55985148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56178928	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56244009	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56276965	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56283216	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56376195	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56380934	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56381216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57256834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57914415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58463446	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60751305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60909440	0.82[EUR][1000 genomes]
rs6689142	0.82[EUR][1000 genomes]
rs73013349	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159404600-159407800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159405800-159406800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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