Variant report

Variant	rs13375812
Chromosome Location	chr1:159451429-159451430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159446498..159448830-chr1:159451407..159454063,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10797035	0.92[ASN][1000 genomes]
rs10797037	1.00[ASN][1000 genomes]
rs11265216	0.91[ASN][1000 genomes]
rs12127080	0.93[ASN][1000 genomes]
rs12564019	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12565926	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12566875	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13375571	0.94[AFR][1000 genomes]
rs13375614	0.88[AFR][1000 genomes]
rs13376196	0.88[AFR][1000 genomes]
rs35089781	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4128726	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4233351	0.93[ASN][1000 genomes]
rs4233352	0.93[ASN][1000 genomes]
rs4328070	0.94[AFR][1000 genomes]
rs4540655	0.90[ASN][1000 genomes]
rs4584388	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587563	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4636457	0.92[AFR][1000 genomes]
rs55638552	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55700503	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55836400	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55893685	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55985148	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56178928	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244009	1.00[EUR][1000 genomes]
rs56276965	0.88[EUR][1000 genomes]
rs56283216	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56376195	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56380934	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56381216	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57115562	0.86[AFR][1000 genomes]
rs57256834	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57914415	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58463446	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59594015	0.88[AFR][1000 genomes]
rs60751305	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60909440	0.93[EUR][1000 genomes]
rs6680456	0.91[ASN][1000 genomes]
rs6687518	0.91[ASN][1000 genomes]
rs6689142	0.93[EUR][1000 genomes]
rs73013306	0.86[AFR][1000 genomes]
rs73013308	0.88[AFR][1000 genomes]
rs73013312	0.88[AFR][1000 genomes]
rs73013313	0.81[AFR][1000 genomes]
rs73013315	0.86[AFR][1000 genomes]
rs73013316	0.88[AFR][1000 genomes]
rs73013319	0.90[AFR][1000 genomes]
rs73013323	0.88[AFR][1000 genomes]
rs73013326	0.88[AFR][1000 genomes]
rs73013329	0.94[AFR][1000 genomes]
rs73013335	0.92[AFR][1000 genomes]
rs73013337	0.94[AFR][1000 genomes]
rs73013340	0.94[AFR][1000 genomes]
rs73013346	0.94[AFR][1000 genomes]
rs73013349	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73013352	0.94[AFR][1000 genomes]
rs73013355	0.94[AFR][1000 genomes]
rs73013357	0.94[AFR][1000 genomes]
rs73013360	0.94[AFR][1000 genomes]
rs73013361	0.94[AFR][1000 genomes]
rs73017432	0.92[AFR][1000 genomes]
rs73017434	0.92[AFR][1000 genomes]
rs73017437	0.92[AFR][1000 genomes]
rs73017439	0.92[AFR][1000 genomes]
rs73017469	0.90[AFR][1000 genomes]
rs73017477	0.90[AFR][1000 genomes]
rs73031644	0.86[AFR][1000 genomes]
rs73031647	0.88[AFR][1000 genomes]
rs7514139	0.84[ASN][1000 genomes]
rs7525975	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159440400-159456600	Weak transcription	Liver	Liver
2	chr1:159445400-159461800	Weak transcription	Muscle Satellite Cultured Cells	--

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