Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10797035	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10797037	0.93[ASN][1000 genomes]
rs11265215	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11265216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12127080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760402	0.89[EUR][1000 genomes]
rs13375812	0.93[ASN][1000 genomes]
rs4233352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339862	0.80[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4540655	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584388	0.93[ASN][1000 genomes]
rs4656837	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap]
rs55836400	0.86[ASN][1000 genomes]
rs56376195	0.91[ASN][1000 genomes]
rs6680456	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6687518	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73013349	0.91[ASN][1000 genomes]
rs7514139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7525975	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7532282	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4233351	TMEM79	cis	cerebellum	SCAN
rs4233351	CD84	cis	cerebellum	SCAN
rs4233351	CD48	cis	cerebellum	SCAN
rs4233351	ARHGEF11	cis	cerebellum	SCAN
rs4233351	THBS3	cis	cerebellum	SCAN
rs4233351	MUC1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159440400-159456600	Weak transcription	Liver	Liver
2	chr1:159445400-159446400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:159445400-159461800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:159445600-159446400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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