Variant report
| Variant | rs10797037 |
|---|---|
| Chromosome Location | chr1:159458371-159458372 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10489856 | 0.85[CEU][hapmap] |
| rs10797035 | 0.92[ASN][1000 genomes] |
| rs11265165 | 0.85[CEU][hapmap] |
| rs11265216 | 0.91[ASN][1000 genomes] |
| rs12061273 | 0.85[CEU][hapmap] |
| rs12127080 | 0.93[ASN][1000 genomes] |
| rs12562171 | 1.00[CEU][hapmap] |
| rs12564019 | 1.00[CEU][hapmap] |
| rs12565926 | 1.00[CEU][hapmap] |
| rs12566875 | 1.00[CEU][hapmap] |
| rs13375812 | 1.00[ASN][1000 genomes] |
| rs4128726 | 1.00[CEU][hapmap] |
| rs4233351 | 0.93[ASN][1000 genomes] |
| rs4233352 | 0.93[ASN][1000 genomes] |
| rs4339862 | 0.82[CHB][hapmap];0.94[JPT][hapmap] |
| rs4540655 | 0.90[ASN][1000 genomes] |
| rs4579753 | 1.00[CEU][hapmap] |
| rs4584388 | 1.00[ASN][1000 genomes] |
| rs4656837 | 0.86[CHB][hapmap];0.94[JPT][hapmap] |
| rs55836400 | 0.93[ASN][1000 genomes] |
| rs56376195 | 0.99[ASN][1000 genomes] |
| rs6680456 | 0.91[ASN][1000 genomes] |
| rs6687518 | 0.91[ASN][1000 genomes] |
| rs73013349 | 0.99[ASN][1000 genomes] |
| rs7514139 | 0.84[ASN][1000 genomes] |
| rs7525975 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432975 | chr1:159431927-159461927 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159445400-159461800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
