Variant report

Variant	rs12566875
Chromosome Location	chr1:159440210-159440211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:159439725-159440338	HUVEC	blood vessel:	n/a	chr1:159439757-159439766
2	POLR2A	chr1:159439650-159440230	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000228560	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489856	0.85[CEU][hapmap]
rs11265165	0.85[CEU][hapmap]
rs12061273	0.85[CEU][hapmap]
rs12562171	1.00[CEU][hapmap]
rs12564019	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12565926	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13375812	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34940390	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35089781	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4128726	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339862	0.86[CHB][hapmap]
rs4579753	1.00[CEU][hapmap]
rs4584388	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4587563	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55638552	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55685457	1.00[AFR][1000 genomes]
rs55700503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55836400	0.98[EUR][1000 genomes]
rs55893685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55985148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56178928	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56244009	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56276965	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56283216	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56376195	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56380934	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56381216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57256834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57914415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58463446	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60751305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60909440	0.91[EUR][1000 genomes]
rs6689142	0.91[EUR][1000 genomes]
rs73013349	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
2	chr1:159439000-159440400	Enhancers	Liver	Liver
3	chr1:159439600-159441200	Weak transcription	Osteobl	bone
4	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:159440000-159440400	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:159440000-159440400	Enhancers	Left Ventricle	heart

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