Variant report
| Variant | rs60909440 |
|---|---|
| Chromosome Location | chr1:159481337-159481338 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11265215 | 0.91[ASN][1000 genomes] |
| rs12564019 | 0.82[EUR][1000 genomes] |
| rs12565926 | 0.91[EUR][1000 genomes] |
| rs12566875 | 0.91[EUR][1000 genomes] |
| rs12760402 | 0.91[ASN][1000 genomes] |
| rs13375812 | 0.93[EUR][1000 genomes] |
| rs35089781 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4128726 | 0.82[EUR][1000 genomes] |
| rs4147228 | 0.93[ASN][1000 genomes] |
| rs4584388 | 0.93[EUR][1000 genomes] |
| rs4587563 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55638552 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55700503 | 0.82[EUR][1000 genomes] |
| rs55836400 | 0.93[EUR][1000 genomes] |
| rs55893685 | 0.82[EUR][1000 genomes] |
| rs55985148 | 0.91[EUR][1000 genomes] |
| rs56178928 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56244009 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56276965 | 0.82[EUR][1000 genomes] |
| rs56283216 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56376195 | 0.93[EUR][1000 genomes] |
| rs56380934 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56381216 | 0.91[EUR][1000 genomes] |
| rs57256834 | 0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57937550 | 0.93[AFR][1000 genomes] |
| rs58463446 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs59146397 | 0.97[AFR][1000 genomes] |
| rs60751305 | 0.82[EUR][1000 genomes] |
| rs6678321 | 0.93[AFR][1000 genomes] |
| rs6689142 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73013349 | 0.93[EUR][1000 genomes] |
| rs73017478 | 0.95[AFR][1000 genomes] |
| rs74122914 | 0.95[AFR][1000 genomes] |
| rs7532282 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159478800-159481400 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr1:159480200-159483800 | Enhancers | Liver | Liver |
