Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10797035	0.82[EUR][1000 genomes]
rs11265215	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265216	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12127080	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12564019	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12565926	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12566875	0.88[JPT][hapmap]
rs12760402	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16842073	0.83[MKK][hapmap]
rs35089781	0.90[ASN][1000 genomes]
rs4128726	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4147228	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4233351	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4233352	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4339862	0.81[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap]
rs4540655	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4587563	0.92[ASN][1000 genomes]
rs4656837	0.95[CEU][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap]
rs55638552	0.88[ASN][1000 genomes]
rs56178928	0.90[ASN][1000 genomes]
rs56244009	0.81[ASN][1000 genomes]
rs56283216	0.88[ASN][1000 genomes]
rs56380934	0.88[ASN][1000 genomes]
rs57256834	0.91[ASN][1000 genomes]
rs58463446	0.90[ASN][1000 genomes]
rs60909440	0.92[ASN][1000 genomes]
rs6680456	0.87[EUR][1000 genomes]
rs6687017	0.88[AFR][1000 genomes]
rs6687518	0.88[EUR][1000 genomes]
rs6689142	0.92[ASN][1000 genomes]
rs73013347	0.89[AFR][1000 genomes]
rs7514139	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7519283	0.89[AFR][1000 genomes]
rs7525975	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7532282	CD84	cis	cerebellum	SCAN
rs7532282	ARHGEF11	cis	cerebellum	SCAN
rs7532282	FCRLA	cis	cerebellum	SCAN
rs7532282	DAP3	cis	parietal	SCAN
rs7532282	PEA15	cis	cerebellum	SCAN
rs7532282	CD48	cis	cerebellum	SCAN
rs7532282	THBS3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159478200-159480200	Flanking Active TSS	Liver	Liver
2	chr1:159478800-159479800	Enhancers	Duodenum Mucosa	Duodenum
3	chr1:159478800-159480400	Enhancers	Fetal Intestine Small	intestine
4	chr1:159478800-159481400	Enhancers	Fetal Intestine Large	intestine
5	chr1:159479400-159480200	Enhancers	Pancreas	Pancrea
6	chr1:159479600-159480400	Enhancers	HUVEC	blood vessel

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