The 2.0 version of rSNPBase
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Variant report
Variant
rs16842073
Chromosome Location
chr1:159376044-159376045
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr1:159375789..159376289-chr11:62608644..62609407,2
HCT-116
colon:
No data
No data
No data
Variant related genes
Relation type
ENSG00000133316
Chromatin interaction
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:8)
rs_ID
r
2
[population]
rs55893819
0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56276965
0.94[AFR][1000 genomes]
rs58476971
0.80[AFR][1000 genomes]
rs59994773
0.82[AFR][1000 genomes]
rs6665683
1.00[MEX][hapmap]
rs6697809
0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031627
0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031650
0.82[AFR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links