Variant report

Variant	rs6665683
Chromosome Location	chr1:159265128-159265129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16841953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842016	0.83[AMR][1000 genomes]
rs16842073	1.00[MEX][hapmap]
rs2746043	1.00[MEX][hapmap]
rs2746044	1.00[MEX][hapmap]
rs2814755	1.00[MEX][hapmap]
rs2852717	1.00[MEX][hapmap]
rs2852719	1.00[MEX][hapmap]
rs34268064	0.85[AMR][1000 genomes]
rs35307067	0.85[AMR][1000 genomes]
rs35606379	0.85[AMR][1000 genomes]
rs36233781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55691277	0.83[AMR][1000 genomes]
rs56389770	1.00[AFR][1000 genomes]
rs56854683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58135923	0.90[AFR][1000 genomes]
rs59488253	0.92[AFR][1000 genomes]
rs6685135	0.85[AMR][1000 genomes]
rs6693639	0.85[AMR][1000 genomes]
rs73027927	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027971	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links