Variant report

Variant	rs35606379
Chromosome Location	chr1:159201620-159201621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16841953	0.85[AMR][1000 genomes]
rs34268064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35307067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36233781	0.85[AMR][1000 genomes]
rs56854683	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61828190	0.85[AFR][1000 genomes]
rs6685135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027927	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159198000-159202000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:159199600-159201800	Enhancers	Hela-S3	cervix
3	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:159201600-159204200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links