Variant report

Variant	rs61828190
Chromosome Location	chr1:159214903-159214904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11265156	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12057836	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12063098	0.83[ASN][1000 genomes]
rs12069029	1.00[ASN][1000 genomes]
rs12072644	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12410844	0.83[ASN][1000 genomes]
rs17666424	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34029634	0.83[ASN][1000 genomes]
rs34217855	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34268064	0.85[AFR][1000 genomes]
rs35307067	0.81[AFR][1000 genomes]
rs35606379	0.85[AFR][1000 genomes]
rs55747323	0.81[ASN][1000 genomes]
rs55874210	0.81[ASN][1000 genomes]
rs56854683	0.83[AFR][1000 genomes]
rs61828203	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828208	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828210	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828211	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828213	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828215	0.81[ASN][1000 genomes]
rs61828216	0.81[ASN][1000 genomes]
rs61828217	0.81[ASN][1000 genomes]
rs61828219	0.81[ASN][1000 genomes]
rs6656286	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660102	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6685135	0.85[AFR][1000 genomes]
rs6693639	0.85[AFR][1000 genomes]
rs72711391	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713603	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533790	0.83[ASN][1000 genomes]
rs7549785	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159210200-159217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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