Variant report

Variant	rs7549785
Chromosome Location	chr1:159277868-159277869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12069029	0.81[ASN][1000 genomes]
rs12409540	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12410757	0.87[AFR][1000 genomes]
rs16841987	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs17422585	0.87[AFR][1000 genomes]
rs3845625	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4548435	0.83[MKK][hapmap];1.00[YRI][hapmap]
rs55747323	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55874210	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821494	0.87[AFR][1000 genomes]
rs61821510	0.87[AFR][1000 genomes]
rs61828190	0.81[ASN][1000 genomes]
rs61828203	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61828208	0.91[ASN][1000 genomes]
rs61828210	0.91[ASN][1000 genomes]
rs61828211	0.91[ASN][1000 genomes]
rs61828213	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828215	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828216	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828217	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828219	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656286	0.81[ASN][1000 genomes]
rs6683536	0.87[AFR][1000 genomes]
rs72711391	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72713603	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72715662	0.87[AFR][1000 genomes]
rs7511872	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7522607	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7553515	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7549785	DAP3	cis	parietal	SCAN
rs7549785	DUSP23	cis	parietal	SCAN
rs7549785	B4GALT3	cis	parietal	SCAN
rs7549785	POU5F1P4	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159275800-159279200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:159277200-159278200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:159277600-159278400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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