Variant report

Variant	rs6683536
Chromosome Location	chr1:159435673-159435674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159433771..159435958-chr1:159436365..159438556,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11265208	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12124964	1.00[ASN][1000 genomes]
rs12126265	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12127293	1.00[ASN][1000 genomes]
rs12131358	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12132709	1.00[ASN][1000 genomes]
rs12135090	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12143746	0.84[ASN][1000 genomes]
rs12409528	1.00[ASN][1000 genomes]
rs12409540	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410757	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750941	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12756262	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17422585	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28420559	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34000798	1.00[ASN][1000 genomes]
rs4133289	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61821494	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821495	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61821510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696020	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72715662	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511872	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519020	1.00[ASN][1000 genomes]
rs7522607	1.00[AFR][1000 genomes]
rs7540007	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7541480	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7549785	0.87[AFR][1000 genomes]
rs7551346	1.00[ASN][1000 genomes]
rs7556355	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334702	chr1:159415928-159442349	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159435200-159438400	Active TSS	Liver	Liver

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