Variant report
Variant | rs7522607 |
---|---|
Chromosome Location | chr1:159285991-159285992 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:159284450..159286758-chr1:159290308..159292391,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
OR10J3 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11265208 | 0.87[AFR][1000 genomes] |
rs12126265 | 0.87[AFR][1000 genomes] |
rs12131358 | 0.87[AFR][1000 genomes] |
rs12135090 | 0.87[AFR][1000 genomes] |
rs12409540 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs12410757 | 1.00[AFR][1000 genomes] |
rs12750941 | 0.87[AFR][1000 genomes] |
rs12756262 | 0.87[AFR][1000 genomes] |
rs16841987 | 0.87[CEU][hapmap];1.00[CHB][hapmap] |
rs17422585 | 1.00[ASW][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes] |
rs28420559 | 0.87[AFR][1000 genomes] |
rs3845625 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
rs4133289 | 0.87[AFR][1000 genomes] |
rs4548435 | 0.82[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
rs55747323 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs55874210 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61821494 | 1.00[AFR][1000 genomes] |
rs61821510 | 1.00[AFR][1000 genomes] |
rs61828215 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61828216 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61828217 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61828219 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6683536 | 1.00[AFR][1000 genomes] |
rs72715662 | 1.00[AFR][1000 genomes] |
rs7511872 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
rs7540007 | 0.87[AFR][1000 genomes] |
rs7541480 | 0.87[AFR][1000 genomes] |
rs7549785 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7553515 | 1.00[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:159284000-159286600 | Enhancers | Primary monocytes fromperipheralblood | blood |
2 | chr1:159285000-159286000 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |