Variant report
| Variant | rs61828219 |
|---|---|
| Chromosome Location | chr1:159258641-159258642 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11265208 | 0.86[AFR][1000 genomes] |
| rs12069029 | 0.81[ASN][1000 genomes] |
| rs12126265 | 0.86[AFR][1000 genomes] |
| rs12131358 | 0.86[AFR][1000 genomes] |
| rs12135090 | 0.86[AFR][1000 genomes] |
| rs12750941 | 0.86[AFR][1000 genomes] |
| rs12756262 | 0.86[AFR][1000 genomes] |
| rs28420559 | 0.86[AFR][1000 genomes] |
| rs4133289 | 0.86[AFR][1000 genomes] |
| rs55747323 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55874210 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61828190 | 0.81[ASN][1000 genomes] |
| rs61828203 | 0.81[ASN][1000 genomes] |
| rs61828208 | 0.91[ASN][1000 genomes] |
| rs61828210 | 0.91[ASN][1000 genomes] |
| rs61828211 | 0.91[ASN][1000 genomes] |
| rs61828213 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61828215 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61828216 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61828217 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6656286 | 0.81[ASN][1000 genomes] |
| rs72711391 | 0.81[ASN][1000 genomes] |
| rs72713603 | 0.91[ASN][1000 genomes] |
| rs7522607 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7540007 | 0.86[AFR][1000 genomes] |
| rs7541480 | 0.86[AFR][1000 genomes] |
| rs7549785 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:159253600-159259000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 2 | chr1:159253800-159258800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
