Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11265156	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12057836	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12063098	0.83[ASN][1000 genomes]
rs12069029	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12072644	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12410844	0.83[ASN][1000 genomes]
rs34029634	0.83[ASN][1000 genomes]
rs34217855	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55747323	0.81[ASN][1000 genomes]
rs55874210	0.81[ASN][1000 genomes]
rs61828190	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828203	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828208	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828210	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828211	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828213	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828215	0.81[ASN][1000 genomes]
rs61828216	0.81[ASN][1000 genomes]
rs61828217	0.81[ASN][1000 genomes]
rs61828219	0.81[ASN][1000 genomes]
rs6660102	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72711391	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713603	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533790	0.83[ASN][1000 genomes]
rs7549785	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv946448	chr1:159209579-159211067	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159208800-159210200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:159208800-159210600	Enhancers	HMEC	breast
4	chr1:159209000-159210000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:159209000-159210600	Enhancers	NHEK	skin
6	chr1:159209000-159211000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:159209200-159210200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:159209200-159210200	Enhancers	HUVEC	blood vessel
9	chr1:159209200-159210400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:159209400-159210000	Enhancers	Hela-S3	cervix
11	chr1:159209600-159209800	Enhancers	GM12878-XiMat	blood

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