Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11265156	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12057836	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12069029	0.91[ASN][1000 genomes]
rs12072644	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16841953	0.81[AFR][1000 genomes]
rs17666424	0.81[AMR][1000 genomes]
rs34217855	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55747323	0.91[ASN][1000 genomes]
rs55874210	0.91[ASN][1000 genomes]
rs56854683	0.88[AFR][1000 genomes]
rs61828190	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828203	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828213	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828215	0.91[ASN][1000 genomes]
rs61828216	0.91[ASN][1000 genomes]
rs61828217	0.91[ASN][1000 genomes]
rs61828219	0.91[ASN][1000 genomes]
rs6656286	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6660102	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72711391	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73027927	0.80[AFR][1000 genomes]
rs7549785	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159230600-159231400	Enhancers	HMEC	breast
2	chr1:159230600-159233200	Enhancers	NHEK	skin
3	chr1:159230800-159231400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:159230800-159232800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: