Variant report

Variant	rs12069029
Chromosome Location	chr1:159207945-159207946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489849	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11265150	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11265152	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11265156	0.81[AMR][1000 genomes]
rs12057836	0.81[AMR][1000 genomes]
rs12063098	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12072644	0.81[AMR][1000 genomes]
rs12095174	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12407488	0.94[EUR][1000 genomes]
rs12410844	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3027076	0.95[EUR][1000 genomes]
rs34029634	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34217855	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34683667	0.98[EUR][1000 genomes]
rs35113846	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35610895	0.98[EUR][1000 genomes]
rs55747323	0.81[ASN][1000 genomes]
rs55874210	0.81[ASN][1000 genomes]
rs61828190	1.00[ASN][1000 genomes]
rs61828203	1.00[ASN][1000 genomes]
rs61828208	0.91[ASN][1000 genomes]
rs61828210	0.91[ASN][1000 genomes]
rs61828211	0.91[ASN][1000 genomes]
rs61828213	0.91[ASN][1000 genomes]
rs61828215	0.81[ASN][1000 genomes]
rs61828216	0.81[ASN][1000 genomes]
rs61828217	0.81[ASN][1000 genomes]
rs61828219	0.81[ASN][1000 genomes]
rs6656286	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6660102	0.81[AMR][1000 genomes]
rs6687584	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6687589	0.91[EUR][1000 genomes]
rs72711391	1.00[ASN][1000 genomes]
rs72713603	0.91[ASN][1000 genomes]
rs7533790	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7533795	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7549785	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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