Variant report

Variant	rs12095174
Chromosome Location	chr1:159199394-159199395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489849	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265150	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265152	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12063098	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12069029	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12084987	0.80[AFR][1000 genomes]
rs12407488	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12410844	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3027008	0.91[ASN][1000 genomes]
rs3027012	0.91[ASN][1000 genomes]
rs3027034	0.91[ASN][1000 genomes]
rs3027076	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34029634	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34217855	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34683667	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35113846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35333710	0.91[ASN][1000 genomes]
rs35405068	1.00[ASN][1000 genomes]
rs35610895	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921532	0.84[AFR][1000 genomes]
rs6676002	0.91[ASN][1000 genomes]
rs6687584	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687589	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533790	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7533795	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159197600-159201600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:159198000-159202000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:159198400-159200600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:159198800-159199800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:159199000-159200200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:159199000-159200200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:159199000-159200200	Enhancers	HMEC	breast
8	chr1:159199000-159200600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:159199000-159201600	Enhancers	A549	lung
10	chr1:159199200-159199600	Enhancers	Lung	lung
11	chr1:159199200-159199600	Flanking Active TSS	Hela-S3	cervix
12	chr1:159199200-159199800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:159199200-159199800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:159199200-159200000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:159199200-159200000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:159199200-159200200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:159199200-159200200	Enhancers	HSMMtube	muscle
18	chr1:159199200-159200400	Enhancers	NHEK	skin
19	chr1:159199200-159200600	Enhancers	Muscle Satellite Cultured Cells	--

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