Variant report

Variant	rs6687589
Chromosome Location	chr1:159202090-159202091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10489849	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265150	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265152	0.84[EUR][1000 genomes]
rs12063098	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12069029	0.91[EUR][1000 genomes]
rs12095174	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407488	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12410844	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17666424	0.85[AMR][1000 genomes]
rs3027008	0.91[ASN][1000 genomes]
rs3027012	0.91[ASN][1000 genomes]
rs3027034	0.91[ASN][1000 genomes]
rs3027048	0.81[AFR][1000 genomes]
rs3027052	0.81[AFR][1000 genomes]
rs3027055	0.83[AFR][1000 genomes]
rs3027063	0.87[AFR][1000 genomes]
rs3027076	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34029634	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34217855	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34683667	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35105792	0.83[AFR][1000 genomes]
rs35113846	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35333710	0.91[ASN][1000 genomes]
rs35405068	1.00[ASN][1000 genomes]
rs35610895	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828203	0.81[AMR][1000 genomes]
rs6676002	0.91[ASN][1000 genomes]
rs6687584	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72711391	0.83[AMR][1000 genomes]
rs72713603	0.81[AMR][1000 genomes]
rs7533790	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7533795	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159201600-159204200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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