Variant report

Variant	rs11265152
Chromosome Location	chr1:159205730-159205731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489849	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11265150	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12063098	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12069029	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12095174	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12407488	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410844	0.91[EUR][1000 genomes]
rs3027076	0.89[EUR][1000 genomes]
rs34029634	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34683667	0.91[EUR][1000 genomes]
rs35113846	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35610895	0.91[EUR][1000 genomes]
rs6687584	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6687589	0.84[EUR][1000 genomes]
rs7533790	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7533795	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159199600-159211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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