Variant report

Variant	rs3027055
Chromosome Location	chr1:159186063-159186064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489848	0.91[ASN][1000 genomes]
rs10489854	0.85[ASN][1000 genomes]
rs10489855	0.85[ASN][1000 genomes]
rs11265146	0.91[ASN][1000 genomes]
rs11265164	0.84[ASN][1000 genomes]
rs12034864	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12084987	0.81[EUR][1000 genomes]
rs12087219	0.85[ASN][1000 genomes]
rs12121203	0.90[ASN][1000 genomes]
rs12561917	0.91[ASN][1000 genomes]
rs12564837	0.85[ASN][1000 genomes]
rs12568101	0.91[ASN][1000 genomes]
rs16841967	0.85[ASN][1000 genomes]
rs2325914	0.87[ASN][1000 genomes]
rs2325915	0.87[ASN][1000 genomes]
rs2875781	0.85[ASN][1000 genomes]
rs3027044	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027045	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3027048	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3027052	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3027056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027061	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027063	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027074	0.91[ASN][1000 genomes]
rs3027075	0.91[ASN][1000 genomes]
rs3027076	0.83[AFR][1000 genomes]
rs3027077	0.91[ASN][1000 genomes]
rs34023441	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34497749	0.91[ASN][1000 genomes]
rs34683667	0.83[AFR][1000 genomes]
rs34757892	0.91[ASN][1000 genomes]
rs34982367	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35014997	0.91[ASN][1000 genomes]
rs35105792	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35262301	0.91[ASN][1000 genomes]
rs35921532	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845624	0.91[ASN][1000 genomes]
rs4083420	0.81[EUR][1000 genomes]
rs4498802	0.91[ASN][1000 genomes]
rs60069993	0.90[ASN][1000 genomes]
rs6687589	0.83[AFR][1000 genomes]
rs72633670	0.85[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:159181400-159188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:159185000-159190400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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