Variant report

Variant	rs3027044
Chromosome Location	chr1:159181869-159181870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12034864	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12084987	0.85[AMR][1000 genomes]
rs3027045	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3027048	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3027051	0.90[ASN][1000 genomes]
rs3027052	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3027055	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027056	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027061	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027063	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34023441	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34127467	0.83[ASN][1000 genomes]
rs34982367	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35105792	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35921532	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs3027044	THBS3	cis	parietal	SCAN
rs3027044	EFNA1	cis	cerebellum	SCAN
rs3027044	DENND4B	cis	cerebellum	SCAN
rs3027044	TFAP2A	trans	cerebellum	SCAN
rs3027044	PEA15	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159182200	Weak transcription	Spleen	Spleen
3	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159181000-159182000	Enhancers	HSMM	muscle
5	chr1:159181400-159182400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:159181400-159188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:159181600-159182200	Enhancers	HUVEC	blood vessel
8	chr1:159181600-159184600	Weak transcription	HSMMtube	muscle
9	chr1:159181800-159184600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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