Variant report

Variant	rs34127467
Chromosome Location	chr1:159181458-159181459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:159181400-159181550	GM12874	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
2	CTCF	chr1:159181440-159181590	GM12878	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
3	RAD21	chr1:159181296-159181636	GM12878	blood:	n/a	chr1:159181502-159181521
4	CTCF	chr1:159181400-159181550	HA-sp	spinal cord:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
5	CTCF	chr1:159181440-159181590	BJ	skin:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
6	CTCF	chr1:159181400-159181550	HCM	heart:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
7	RAD21	chr1:159181279-159181682	ECC-1	luminal epithelium:	n/a	chr1:159181502-159181521
8	RAD21	chr1:159181307-159181652	K562	blood:	n/a	chr1:159181502-159181521
9	CTCF	chr1:159181370-159181767	HUVEC	blood vessel:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
10	CTCF	chr1:159180633-159181935	A549	lung:	n/a	chr1:159181190-159181199 chr1:159181499-159181520 chr1:159181187-159181205 chr1:159181504-159181522
11	CTCF	chr1:159181440-159181590	GM12868	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
12	ZNF143	chr1:159181357-159181710	K562	blood:	n/a	n/a
13	MAFK	chr1:159181414-159181657	K562	blood:	n/a	chr1:159181522-159181538 chr1:159181520-159181540
14	CTCF	chr1:159181420-159181570	GM12868	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
15	CTCF	chr1:159181398-159181586	SK-N-SH_RA	brain:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
16	CTCF	chr1:159181375-159181649	NHEK	skin:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
17	CTCF	chr1:159181440-159181590	AG04449	skin:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
18	CTCF	chr1:159181420-159181570	GM12873	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
19	REST	chr1:159181371-159181565	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr1:159181378-159181650	GM10266	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
21	CTCF	chr1:159181335-159181698	K562	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
22	RAD21	chr1:159181342-159181688	A549	lung:	n/a	chr1:159181502-159181521
23	RAD21	chr1:159181149-159181714	GM12878	blood:	n/a	chr1:159181502-159181521
24	CTCF	chr1:159181394-159181633	MCF-7	breast:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
25	CTCF	chr1:159181440-159181590	HCPEpiC	choroid plexus:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
26	GTF2F1	chr1:159181399-159181599	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr1:159181420-159181570	HL-60	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
28	CTCF	chr1:159181440-159181590	HUVEC	blood vessel:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
29	ELF1	chr1:159181376-159181582	GM12878	blood:	n/a	n/a
30	CTCF	chr1:159181400-159181550	NHEK	skin:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
31	RAD21	chr1:159181309-159181663	SK-N-SH_RA	brain:	n/a	chr1:159181502-159181521
32	CTCF	chr1:159181420-159181570	HA-sp	spinal cord:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
33	CTCF	chr1:159181440-159181590	GM12871	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
34	CTCF	chr1:159181400-159181550	WI-38	lung:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
35	CTCF	chr1:159181386-159181618	MCF-7	breast:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
36	CTCF	chr1:159181372-159181617	Fibrobl	skin:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
37	MYC	chr1:159181364-159181527	K562	blood:	n/a	n/a
38	CTCF	chr1:159181420-159181570	BE2_C	brain:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
39	CTCF	chr1:159181390-159181652	Hela-S3	cervix:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
40	CTCF	chr1:159181420-159181570	MCF-7	breast:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
41	CTCF	chr1:159181440-159181590	HVMF	connective:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
42	CTCF	chr1:159181405-159181698	GM13976	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
43	CTCF	chr1:159181420-159181570	GM12866	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
44	CTCF	chr1:159181278-159181642	H1-hESC	embryonic stem cell:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
45	CTCF	chr1:159181440-159181590	HRPEpiC	eye:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
46	CTCF	chr1:159181440-159181590	GM12801	blood:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
47	SMC3	chr1:159181358-159181700	HepG2	liver:	n/a	chr1:159181506-159181520
48	CTCF	chr1:159181387-159181654	LNCaP	prostate:	n/a	chr1:159181499-159181520 chr1:159181504-159181522
49	CTCF	chr1:159181340-159181490	GM12870	blood:	n/a	n/a
50	CTCF	chr1:159181400-159181550	HVMF	connective:	n/a	chr1:159181499-159181520 chr1:159181504-159181522

No.	Distal block	Cell Line	Cell type
1	chr1:159130520..159131495-chr1:159180884..159182144,24	K562	blood:
2	chr1:159129691..159131233-chr1:159180012..159181804,2	MCF-7	breast:
3	chr1:159174604..159177754-chr1:159180035..159182676,3	K562	blood:
4	chr1:159101820..159102345-chr1:159180944..159181952,4	MCF-7	breast:
5	chr1:159129289..159129912-chr1:159181140..159181994,2	MCF-7	breast:
6	chr1:159130498..159131890-chr1:159181009..159182449,9	MCF-7	breast:
7	chr1:159131846..159132446-chr1:159181062..159181654,2	MCF-7	breast:
8	chr1:159101871..159102754-chr1:159180441..159181987,6	K562	blood:
9	chr1:159167007..159168193-chr1:159181056..159182026,4	MCF-7	breast:
10	chr1:159090280..159090949-chr1:159180874..159181620,2	MCF-7	breast:
11	chr1:159130523..159131496-chr1:159179878..159182456,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225670	TF binding region
ENSG00000213088	Chromatin interaction

rs_ID	r²[population]
rs10489848	0.82[AMR][1000 genomes]
rs12034864	0.83[ASN][1000 genomes]
rs12561917	0.82[AMR][1000 genomes]
rs2073090	0.86[ASN][1000 genomes]
rs2325914	0.82[AMR][1000 genomes]
rs3027033	0.89[ASN][1000 genomes]
rs3027044	0.83[ASN][1000 genomes]
rs3027045	0.84[ASN][1000 genomes]
rs3027048	0.82[ASN][1000 genomes]
rs3027051	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3027052	0.83[ASN][1000 genomes]
rs3027075	0.82[AMR][1000 genomes]
rs3027077	0.82[AMR][1000 genomes]
rs34023441	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34111786	0.88[ASN][1000 genomes]
rs34497749	0.82[AMR][1000 genomes]
rs34757892	0.82[AMR][1000 genomes]
rs34982367	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs35014997	0.82[AMR][1000 genomes]
rs35105792	0.82[ASN][1000 genomes]
rs35262301	0.82[AMR][1000 genomes]
rs4498802	0.82[AMR][1000 genomes]

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159178200-159182200	Weak transcription	Spleen	Spleen
3	chr1:159178200-159188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:159180600-159181800	Enhancers	A549	lung
5	chr1:159181000-159181600	Enhancers	HSMMtube	muscle
6	chr1:159181000-159181800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:159181000-159182000	Enhancers	HSMM	muscle
8	chr1:159181200-159181600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:159181200-159181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:159181200-159181600	Flanking Active TSS	HUVEC	blood vessel
11	chr1:159181400-159181600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
12	chr1:159181400-159182400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:159181400-159188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links