Variant report

Variant	rs2073090
Chromosome Location	chr1:159177974-159177975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr1:159177958-159178275	K562	blood:	n/a	n/a
2	SIN3AK20	chr1:159177876-159178162	H1-hESC	embryonic stem cell:	n/a	n/a
3	ZNF143	chr1:159177894-159178595	H1-hESC	embryonic stem cell:	n/a	n/a
4	SIN3A	chr1:159177677-159178632	H1-hESC	embryonic stem cell:	n/a	n/a
5	REST	chr1:159177899-159178599	MCF-7	breast:	n/a	n/a
6	REST	chr1:159177817-159178255	ECC-1	luminal epithelium:	n/a	n/a
7	ZNF384	chr1:159177952-159178011	GM12878	blood:	n/a	n/a
8	TCF12	chr1:159177937-159178131	H1-hESC	embryonic stem cell:	n/a	n/a
9	REST	chr1:159177732-159178678	HL-60	blood:	n/a	n/a
10	REST	chr1:159177953-159178199	GM12878	blood:	n/a	n/a
11	REST	chr1:159177811-159178125	MCF-7	breast:	n/a	n/a
12	REST	chr1:159177741-159178618	GM12878	blood:	n/a	n/a
13	REST	chr1:159177802-159178249	PANC-1	pancreas:	n/a	n/a
14	SIN3AK20	chr1:159177799-159178200	H1-hESC	embryonic stem cell:	n/a	n/a
15	REST	chr1:159177902-159178145	SK-N-SH	brain:	n/a	n/a
16	CEBPB	chr1:159177856-159178192	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAZ	chr1:159177917-159178078	GM12878	blood:	n/a	n/a
18	REST	chr1:159177828-159178643	ECC-1	luminal epithelium:	n/a	n/a
19	MAX	chr1:159177710-159178144	H1-hESC	embryonic stem cell:	n/a	n/a
20	SP1	chr1:159177796-159178219	H1-hESC	embryonic stem cell:	n/a	n/a
21	REST	chr1:159177828-159178586	K562	blood:	n/a	n/a
22	REST	chr1:159177772-159178303	PFSK-1	brain:	n/a	n/a
23	REST	chr1:159177927-159178115	GM12878	blood:	n/a	n/a
24	REST	chr1:159177817-159178254	PFSK-1	brain:	n/a	n/a
25	REST	chr1:159177966-159178235	PANC-1	pancreas:	n/a	n/a
26	REST	chr1:159177905-159178231	A549	lung:	n/a	n/a
27	REST	chr1:159177893-159178334	Hela-S3	cervix:	n/a	n/a
28	REST	chr1:159177636-159178723	H1-hESC	embryonic stem cell:	n/a	n/a
29	REST	chr1:159177906-159178637	HL-60	blood:	n/a	n/a
30	REST	chr1:159177793-159178203	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr1:159177518-159178187	H1-neurons	neurons:	n/a	n/a
32	REST	chr1:159177582-159178764	H1-hESC	embryonic stem cell:	n/a	n/a
33	REST	chr1:159177951-159178194	K562	blood:	n/a	n/a
34	REST	chr1:159177914-159178205	SK-N-SH	brain:	n/a	n/a
35	RFX5	chr1:159177638-159178221	H1-hESC	embryonic stem cell:	n/a	chr1:159177770-159177784 chr1:159177772-159177786 chr1:159177798-159177807
36	REST	chr1:159177781-159178293	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000225670	TF binding region

rs_ID	r²[population]
rs12568101	0.85[AMR][1000 genomes]
rs3027033	0.95[ASN][1000 genomes]
rs3027051	0.82[ASN][1000 genomes]
rs34111786	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34127467	0.86[ASN][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159158800-159188800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:159176200-159178200	Enhancers	Spleen	Spleen
3	chr1:159176600-159179200	Enhancers	Fetal Brain Male	brain
4	chr1:159177400-159178200	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:159177400-159178600	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr1:159177600-159178000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr1:159177600-159178000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:159177600-159178000	Active TSS	GM12878-XiMat	blood
9	chr1:159177600-159178200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:159177600-159178200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:159177600-159178200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:159177600-159178200	Enhancers	Brain Anterior Caudate	brain
13	chr1:159177600-159178200	Enhancers	Placenta	Placenta
14	chr1:159177600-159178400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr1:159177600-159178400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:159177600-159178400	Flanking Active TSS	Fetal Brain Female	brain
17	chr1:159177800-159178000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr1:159177800-159178000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr1:159177800-159178000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr1:159177800-159178000	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr1:159177800-159178000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:159177800-159178200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr1:159177800-159178200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr1:159177800-159178200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
25	chr1:159177800-159178200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
26	chr1:159177800-159178600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr1:159177800-159179000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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