Variant report

Variant	rs12561917
Chromosome Location	chr1:159189935-159189936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489854	0.90[ASN][1000 genomes]
rs10489855	0.90[ASN][1000 genomes]
rs11265146	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265164	0.90[ASN][1000 genomes]
rs12087219	0.90[ASN][1000 genomes]
rs12121203	0.85[ASN][1000 genomes]
rs12137096	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12564837	0.90[ASN][1000 genomes]
rs12568101	1.00[ASN][1000 genomes]
rs16841967	0.90[ASN][1000 genomes]
rs2325914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2325915	0.93[ASN][1000 genomes]
rs3027051	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3027055	0.91[ASN][1000 genomes]
rs3027056	0.91[ASN][1000 genomes]
rs3027061	0.91[ASN][1000 genomes]
rs3027063	0.91[ASN][1000 genomes]
rs3027074	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3027077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34127467	0.82[AMR][1000 genomes]
rs34497749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34757892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35014997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35921532	0.91[ASN][1000 genomes]
rs3845624	0.85[ASN][1000 genomes]
rs4498802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60069993	0.85[ASN][1000 genomes]
rs72633670	0.90[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159185000-159190400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:159188000-159190400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:159188200-159190200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:159188200-159190200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:159188400-159191000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:159188600-159190200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:159189000-159190800	Enhancers	Fetal Brain Female	brain
8	chr1:159189200-159191000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:159189400-159190600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:159189600-159190600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:159189600-159190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:159189600-159190800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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