Variant report

Variant	rs2325915
Chromosome Location	chr1:159212040-159212041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10489848	0.93[ASN][1000 genomes]
rs10489854	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11265146	0.93[ASN][1000 genomes]
rs11265159	0.89[EUR][1000 genomes]
rs11265164	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12083313	0.82[EUR][1000 genomes]
rs12087219	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12097396	0.82[EUR][1000 genomes]
rs12121203	0.91[ASN][1000 genomes]
rs12561917	0.93[ASN][1000 genomes]
rs12564837	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12568101	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16841957	0.84[EUR][1000 genomes]
rs16841967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2325914	0.90[ASN][1000 genomes]
rs2875781	0.85[ASN][1000 genomes]
rs3027055	0.87[ASN][1000 genomes]
rs3027056	0.87[ASN][1000 genomes]
rs3027061	0.87[ASN][1000 genomes]
rs3027063	0.87[ASN][1000 genomes]
rs3027074	0.93[ASN][1000 genomes]
rs3027075	0.93[ASN][1000 genomes]
rs3027077	0.93[ASN][1000 genomes]
rs34497749	0.93[ASN][1000 genomes]
rs34757892	0.93[ASN][1000 genomes]
rs35014997	0.93[ASN][1000 genomes]
rs35262301	0.93[ASN][1000 genomes]
rs35921532	0.87[ASN][1000 genomes]
rs3845624	0.92[ASN][1000 genomes]
rs4498802	0.93[ASN][1000 genomes]
rs56697178	0.84[EUR][1000 genomes]
rs60069993	0.91[ASN][1000 genomes]
rs72633670	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159210200-159217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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