Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489854	0.85[ASN][1000 genomes]
rs10489855	0.85[ASN][1000 genomes]
rs11265154	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11265155	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11265164	0.85[ASN][1000 genomes]
rs12084987	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12087219	0.85[ASN][1000 genomes]
rs12121203	0.93[ASN][1000 genomes]
rs12564837	0.85[ASN][1000 genomes]
rs16841967	0.85[ASN][1000 genomes]
rs2325915	0.85[ASN][1000 genomes]
rs3027055	0.85[ASN][1000 genomes]
rs3027056	0.85[ASN][1000 genomes]
rs3027061	0.85[ASN][1000 genomes]
rs3027063	0.85[ASN][1000 genomes]
rs35921532	0.85[ASN][1000 genomes]
rs3845624	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4083420	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60069993	0.93[ASN][1000 genomes]
rs72633670	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159218400-159220400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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