Variant report

Variant	rs4083420
Chromosome Location	chr1:159194838-159194839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11265154	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11265155	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12084987	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137096	0.92[ASN][1000 genomes]
rs2325924	0.87[ASN][1000 genomes]
rs2875781	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3027044	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs3027045	0.85[GIH][hapmap];0.82[MEX][hapmap]
rs3027055	0.81[EUR][1000 genomes]
rs3027056	0.81[EUR][1000 genomes]
rs3027061	0.81[EUR][1000 genomes]
rs35921532	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3845624	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59012264	0.87[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs4083420	TFAP2A	trans	cerebellum	SCAN
rs4083420	THBS3	cis	parietal	SCAN
rs4083420	S100A6	cis	parietal	SCAN
rs4083420	C1orf189	cis	cerebellum	SCAN
rs4083420	CD5L	cis	cerebellum	SCAN
rs4083420	CD48	cis	cerebellum	SCAN
rs4083420	S100A14	cis	parietal	SCAN
rs4083420	DENND4B	cis	cerebellum	SCAN
rs4083420	OR6Y1	cis	parietal	SCAN
rs4083420	MUC1	cis	parietal	SCAN
rs4083420	CADM3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159193000-159199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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