Variant report

Variant	rs59012264
Chromosome Location	chr1:159251511-159251512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10908703	0.90[ASN][1000 genomes]
rs11265154	0.87[ASN][1000 genomes]
rs11265155	0.87[ASN][1000 genomes]
rs11265159	0.92[ASN][1000 genomes]
rs12083313	0.92[ASN][1000 genomes]
rs12084987	0.87[ASN][1000 genomes]
rs12097396	0.92[ASN][1000 genomes]
rs12121203	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16841957	0.92[ASN][1000 genomes]
rs2325924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083420	0.87[ASN][1000 genomes]
rs56697178	0.92[ASN][1000 genomes]
rs60069993	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60861070	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159246000-159251800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:159249800-159251800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:159250600-159252400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:159250800-159251600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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