Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10908703	0.90[ASN][1000 genomes]
rs10908709	0.85[YRI][hapmap]
rs11265154	0.87[ASN][1000 genomes]
rs11265155	0.87[ASN][1000 genomes]
rs11265159	0.92[ASN][1000 genomes]
rs12083313	0.92[ASN][1000 genomes]
rs12084987	0.87[ASN][1000 genomes]
rs12097396	0.92[ASN][1000 genomes]
rs12121203	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12724895	0.82[YRI][hapmap]
rs16841957	0.92[ASN][1000 genomes]
rs16841967	0.85[JPT][hapmap]
rs2247584	0.85[YRI][hapmap]
rs2251746	0.82[YRI][hapmap]
rs2427836	0.82[YRI][hapmap]
rs2494262	0.82[YRI][hapmap]
rs2494264	0.82[YRI][hapmap]
rs4083420	0.87[ASN][1000 genomes]
rs56697178	0.92[ASN][1000 genomes]
rs59012264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60069993	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60861070	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2325924	FCER1A	cis	brain	BrainEAC

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159232800-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:159233200-159236000	Weak transcription	NHEK	skin
3	chr1:159233200-159236200	Weak transcription	HUVEC	blood vessel
4	chr1:159233400-159236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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