Variant report

Variant	rs2494262
Chromosome Location	chr1:159253672-159253673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10908709	1.00[YRI][hapmap]
rs11265166	0.85[AFR][1000 genomes]
rs12145079	0.82[YRI][hapmap]
rs12724895	0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2247584	0.89[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2251746	1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs2252226	0.85[CEU][hapmap]
rs2427827	0.81[EUR][1000 genomes]
rs2427836	0.89[ASW][hapmap];0.89[CEU][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2494251	0.85[AFR][1000 genomes]
rs2494264	0.89[ASW][hapmap];0.85[CEU][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2511213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2494262	CD1D	cis	cerebellum	SCAN
rs2494262	SHE	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159251800-159253800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159252200-159253800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr1:159252800-159253800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:159253200-159253800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:159253600-159259000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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