Variant report

Variant	rs2427827
Chromosome Location	chr1:159271811-159271812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2252226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2427828	0.90[ASN][1000 genomes]
rs2494250	0.90[ASN][1000 genomes]
rs2494262	0.81[EUR][1000 genomes]
rs2494265	0.90[ASN][1000 genomes]
rs2511213	0.81[EUR][1000 genomes]
rs2511215	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159269400-159272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:159271000-159274200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:159271200-159272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:159271400-159272200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:159271800-159272200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:159271800-159272600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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